5) Xenosaga Series/Xenogears
Linked for ease of reference. Battling robots, alien ghosts made of salt, and the real iron man: Ziggy (Ziggurat 8, not the cartoon).
4) Persona III
One of the most potent examples of personal projection onto the lead character I've ever been through.
3) Ogre Battle 64- Person of Lordly Caliber
Meaningful choices to be made, wars to be won and lost, and many characters to discover and learn about. Not much tastes as sweet as a Dragoon with three front row strikes from a greatsword after all that work with did to unlock the class.
2) Breath of Fire II
The lead character didn't talk but he didn't have to. Engaging characters, a story I felt compelled by, strange dungeons, the shaman fusion system, and turning into a dragon. BoF III and IV made it better, but I tasted Breath of Fire II first.
1) Final Fantasy III (the American SNES version of what would later be FFVI)
First SNES game I ever owned. Massive game, a 14 characters, all of whom I cared about, and a storyline that circled the world twice, broke it, and circled it again.